Toward the active conformations of rhodopsin and the β-adrenergic receptor

Paul R. Gouldson, Nathan J. Kidley, Robert P. Bywater, Georgios Psaroudakis, Harry D. Brooks, Constantino Diaz, David Shire, Christopher A. Reynolds

Research output: Contribution to journalArticle

80 Citations (Scopus)

Abstract

Using sets of experimental distance restraints, which characterize active or inactive receptor conformations, and the X-ray crystal structure of the inactive form of bovine rhodopsin as a starting point, we have constructed models of both the active and inactive forms of rhodopsin and the β 2-adrenergic G-protein coupled receptors (GPCRs). The distance restraints were obtained from published data for site-directed crosslinking, engineered zinc binding, site-directed spin-labeling, IR spectroscopy, and cysteine accessibility studies conducted on class A GPCRs. Molecular dynamics simulations in the presence of either "active" or "inactive" restraints were used to generate two distinguishable receptor models. The process for generating the inactive and active models was validated by the hit rates, yields, and enrichment factors determined for the selection of antagonists in the inactive model and for the selection of agonists in the active model from a set of nonadrenergic GPCR drug-like ligands in a virtual screen using ligand docking software. The simulation results provide new insights into the relationships observed between selected biochemical data, the crystal structure of rhodopsin, and the structural rearrangements that occur during activation.

Original languageEnglish
Pages (from-to)67-84
Number of pages18
JournalProteins: Structure, Function and Genetics
Volume56
Issue number1
Early online date16 Apr 2004
DOIs
Publication statusPublished - 1 Jul 2004
Externally publishedYes

Keywords

  • Active conformation
  • Adrenergic
  • Agonist
  • Antagonist
  • Docking
  • G-protein coupled receptor
  • Inactive conformation
  • Molecular modeling
  • Rhodopsin

ASJC Scopus subject areas

  • Structural Biology
  • Biochemistry
  • Molecular Biology

Fingerprint Dive into the research topics of 'Toward the active conformations of rhodopsin and the β-adrenergic receptor'. Together they form a unique fingerprint.

  • Cite this

    Gouldson, P. R., Kidley, N. J., Bywater, R. P., Psaroudakis, G., Brooks, H. D., Diaz, C., ... Reynolds, C. A. (2004). Toward the active conformations of rhodopsin and the β-adrenergic receptor. Proteins: Structure, Function and Genetics, 56(1), 67-84. https://doi.org/10.1002/prot.20108