System identification of circadian clock in plant Arabidopsis thaliana

Mathias Foo, Hee Young Yoo, Pan Jun Kim

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

1 Citation (Scopus)

Abstract

The use of mathematical models in describing the dynamics of circadian clock in the plant Arabidopsis thaliana is gaining popularity. Models used to describe the plant circadian clock are usually derived from laws of physics and they comprise complex nonlinear ordinary differential equations. In this paper, we build mathematical models of the core loop of plant circadian clock using system identification techniques. This core loop involves two main genes (proteins), i.e. LHY/CCA1 and TOC1. Models obtained using system identification techniques are usually simple, sufficient to describe the relevant dynamics of the system and often are able to provide physical interpretation about the system. The obtained models through system identification can be useful for control design and prediction in the event for which we want to do phenotype manipulation and for understanding the behaviour of the system respectively.
Original languageEnglish
Title of host publicationInternational Conference on Control, Automation and Systems
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages241-246
Number of pages6
ISBN (Print)978-89-93215-05-2
DOIs
Publication statusPublished - 20 Oct 2013
EventInternational Conference on Control, Automation and Systems - Gwangju, Korea, Republic of
Duration: 20 Oct 201323 Oct 2013
Conference number: 13

Conference

ConferenceInternational Conference on Control, Automation and Systems
Abbreviated title(ICCAS 2013)
CountryKorea, Republic of
CityGwangju
Period20/10/1323/10/13

Fingerprint

Clocks
Identification (control systems)
Mathematical models
Ordinary differential equations
Physics
Genes
Proteins

Keywords

  • Biological system
  • System identification
  • Circadian clock

Cite this

Foo, M., Yoo, H. Y., & Kim, P. J. (2013). System identification of circadian clock in plant Arabidopsis thaliana. In International Conference on Control, Automation and Systems (pp. 241-246). Institute of Electrical and Electronics Engineers Inc.. https://doi.org/10.1109/ICCAS.2013.6703901

System identification of circadian clock in plant Arabidopsis thaliana. / Foo, Mathias; Yoo, Hee Young; Kim, Pan Jun.

International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., 2013. p. 241-246.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Foo, M, Yoo, HY & Kim, PJ 2013, System identification of circadian clock in plant Arabidopsis thaliana. in International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., pp. 241-246, International Conference on Control, Automation and Systems , Gwangju, Korea, Republic of, 20/10/13. https://doi.org/10.1109/ICCAS.2013.6703901
Foo M, Yoo HY, Kim PJ. System identification of circadian clock in plant Arabidopsis thaliana. In International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc. 2013. p. 241-246 https://doi.org/10.1109/ICCAS.2013.6703901
Foo, Mathias ; Yoo, Hee Young ; Kim, Pan Jun. / System identification of circadian clock in plant Arabidopsis thaliana. International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., 2013. pp. 241-246
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