Redi: A simulator of stochastic biochemical reaction-diffusion systems

Paola Lecca; Lorenzo Dematté; Adaoha E.C. Ihekwaba; Corrado Priami

doi:10.1109/SIMUL.2010.14

Redi: A simulator of stochastic biochemical reaction-diffusion systems

Paola Lecca
, Lorenzo Dematté
, Adaoha E.C. Ihekwaba
, Corrado Priami

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

3 Citations (Scopus)

Abstract

We present a new model of anisotropic reaction- diffusion systems and the algorithmic framework of the soft- ware Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo. © 2010 IEEE.

Original language	English
Title of host publication	2010 Second International Conference on Advances in System Simulation
Publisher	IEEE
Pages	82-87
Number of pages	6
ISBN (Print)	9780769541426
DOIs	https://doi.org/10.1109/SIMUL.2010.14
Publication status	Published - 2010
Externally published	Yes
Event	2nd International Conference on Advances in System Simulation - Nice, France Duration: 22 Aug 2010 → 27 Aug 2010 Conference number: 2

Publication series

Name	Proceedings - 2nd International Conference on Advances in System Simulation, SIMUL 2010

Conference

Conference	2nd International Conference on Advances in System Simulation
Country/Territory	France
City	Nice
Period	22/08/10 → 27/08/10

Keywords

Bicoid gradient
CoSBiLab Redi
Drosophila embryo
Reaction diffusion systems
Stochastic simulation

Access to Document

10.1109/SIMUL.2010.14

Cite this

Redi: A simulator of stochastic biochemical reaction-diffusion systems. / Lecca, Paola; Dematté, Lorenzo; Ihekwaba, Adaoha E.C. et al.
2010 Second International Conference on Advances in System Simulation. IEEE, 2010. p. 82-87 (Proceedings - 2nd International Conference on Advances in System Simulation, SIMUL 2010).

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

Lecca, P, Dematté, L, Ihekwaba, AEC & Priami, C 2010, Redi: A simulator of stochastic biochemical reaction-diffusion systems. in 2010 Second International Conference on Advances in System Simulation. Proceedings - 2nd International Conference on Advances in System Simulation, SIMUL 2010, IEEE, pp. 82-87, 2nd International Conference on Advances in System Simulation, Nice, France, 22/08/10. https://doi.org/10.1109/SIMUL.2010.14

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keywords = "Bicoid gradient, CoSBiLab Redi, Drosophila embryo, Reaction diffusion systems, Stochastic simulation",

author = "Paola Lecca and Lorenzo Dematt{\'e} and Ihekwaba, \{Adaoha E.C.\} and Corrado Priami",

year = "2010",

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AU - Lecca, Paola

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N1 - Conference code: 2

PY - 2010

Y1 - 2010

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AB - We present a new model of anisotropic reaction- diffusion systems and the algorithmic framework of the soft- ware Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo. © 2010 IEEE.

KW - Bicoid gradient

KW - CoSBiLab Redi

KW - Drosophila embryo

KW - Reaction diffusion systems

KW - Stochastic simulation

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T3 - Proceedings - 2nd International Conference on Advances in System Simulation, SIMUL 2010

SP - 82

EP - 87

BT - 2010 Second International Conference on Advances in System Simulation

PB - IEEE

T2 - 2nd International Conference on Advances in System Simulation

Y2 - 22 August 2010 through 27 August 2010

ER -

Redi: A simulator of stochastic biochemical reaction-diffusion systems

Abstract

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Conference

Keywords

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