Redi: A simulator of stochastic biochemical reaction-diffusion systems

Paola Lecca, Lorenzo Dematté, Adaoha E.C. Ihekwaba, Corrado Priami

Research output: Chapter in Book/Report/Conference proceedingChapterpeer-review

3 Citations (Scopus)

Abstract

We present a new model of anisotropic reaction- diffusion systems and the algorithmic framework of the soft- ware Redi (Reaction-Diffusion simulator) that implements this model. As illustrative application, we show the ability of Redi to reproduce the observed dynamics of the bicoid protein gradient in the Drosophila Melanogaster embryo. © 2010 IEEE.
Original languageEnglish
Title of host publication2010 Second International Conference on Advances in System Simulation
PublisherIEEE
Pages82-87
Number of pages6
ISBN (Print)9780769541426
DOIs
Publication statusPublished - 2010
Externally publishedYes
Event2nd International Conference on Advances in System Simulation - Nice, France
Duration: 22 Aug 201027 Aug 2010
Conference number: 2

Publication series

NameProceedings - 2nd International Conference on Advances in System Simulation, SIMUL 2010

Conference

Conference2nd International Conference on Advances in System Simulation
Country/TerritoryFrance
CityNice
Period22/08/1027/08/10

Keywords

  • Bicoid gradient
  • CoSBiLab Redi
  • Drosophila embryo
  • Reaction diffusion systems
  • Stochastic simulation

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