Diabetic retinopathy environment-wide association study (EWAS) in NHANES 2005–2008

Kevin Blighe, Sarega Gurudas, Ying Lee, Sobha Sivaprasad

Research output: Contribution to journalArticlepeer-review

10 Citations (Scopus)
13 Downloads (Pure)

Abstract

Several circulating biomarkers are reported to be associated with diabetic retinopathy (DR). However, their relative contributions to DR compared to known risk factors, such as hyperglycaemia, hypertension, and hyperlipidaemia, remain unclear. In this data driven study, we used novel models to evaluate the associations of over 400 laboratory parameters with DR compared to the established risk factors. Methods: we performed an environment-wide association study (EWAS) of laboratory parameters available in National Health and Nutrition Examination Survey (NHANES) 2007–2008 in individuals with diabetes with DR as the outcome (test set). We employed independent variable (feature) selection approaches, including parallelised univariate regression modelling, Principal Component Analysis (PCA), penalised regression, and RandomForest™. These models were replicated in NHANES 2005–2006 (replication set). Our test and replication sets consisted of 1025 and 637 individuals with available DR status and laboratory data respectively. Glycohemoglobin (HbA1c) was the strongest risk factor for DR. Our PCA-based approach produced a model that incorporated 18 principal components (PCs) that had an Area under the Curve (AUC) 0.796 (95% CI 0.761–0.832), while penalised regression identified a 9-feature model with 78.51% accuracy and AUC 0.74 (95% CI 0.72–0.77). RandomForest™ identified a 31-feature model with 78.4% accuracy and AUC 0.71 (95% CI 0.65–0.77). On grouping the selected variables in our RandomForest™, hyperglycaemia alone achieved AUC 0.72 (95% CI 0.68–0.76). The AUC increased to 0.84 (95% CI 0.78–0.9) when the model also included hypertension, hypercholesterolemia, haematocrit, renal, and liver function tests.

Original languageEnglish
Article number3643
Pages (from-to)1-18
Number of pages18
JournalJournal of Clinical Medicine
Volume9
Issue number11
DOIs
Publication statusPublished - 12 Nov 2020
Externally publishedYes

Bibliographical note

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

Keywords

  • Circulating biomarkers
  • Diabetic retinopathy
  • Environment wide association study
  • Hyperglycaemia

ASJC Scopus subject areas

  • Medicine(all)

Fingerprint

Dive into the research topics of 'Diabetic retinopathy environment-wide association study (EWAS) in NHANES 2005–2008'. Together they form a unique fingerprint.

Cite this