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• Article

  A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

  Foo, M., Gherman, I., Zhang, P., Bates, D. & Denby, K., 15 Jun 2018, In: ACS Synthetic Biology. 7, 6, p. 1553-1564 12 p., 7.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Pathogens
  • Feedback control
  • Synthetic biology
  • Synthetic Biology
  • Arabidopsis
  3 Citations (Scopus)

  13 Downloads (Pure)

• Computationally Efficient Modelling of Stochastic Spatio-Temporal Dynamics in Biomolecular Networks

  Kim, J., Foo, M. & Bates, D. G., 22 Feb 2018, In: Scientific Reports. 8, 1, 1 p., 3498.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Molecules
  • Epidermal Growth Factor
  • Epithelial Cells
  • Molecular interactions
  • Computational efficiency
  1 Citation (Scopus)

  20 Downloads (Pure)

• Design of an embedded inverse-feedforward biomolecular trackingcontroller for enzymatic reaction processes

  Foo, M., Kim, J., Sawlekar, R. & Bates, D., 6 Apr 2017, In: Computers and Chemical Engineering. 99, p. 145-157 13 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Controllers
  • Chemical reactions
  • Network theory (graphs)
  • Synthetic biology
  • Bioengineering
  6 Citations (Scopus)

  13 Downloads (Pure)

• Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation

  Foo, M., Kim, J. & Bates, D., 29 Mar 2019, In: IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 2, p. 583-595 13 p., 8254368.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Gene Regulatory Network
  • Gene Regulatory Networks
  • S-system
  • Genes
  • Perturbation
  3 Citations (Scopus)

  42 Downloads (Pure)

• PID and state feedback controllers using DNA strand displacement reactions

  Paulino, N., Foo, M., Kim, J. & Bates, D., 1 Oct 2019, In: IEEE Control Systems Letters. 3, 4, p. 805-810 6 p., 8721529.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • State Feedback
  • DNA
  • Nucleic acids
  • State feedback
  • Controller
  5 Citations (Scopus)

  93 Downloads (Pure)

• Robustness analysis of a nucleic acid controller for a dynamic biomolecular process using the structured singular value

  Paulino, N., Foo, M., Kim, J. & Bates, D., Jun 2019, In: Journal of Process Control. 78, p. 34-44 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Structured Singular Value
  • Nucleic acids
  • Robustness Analysis
  • Dynamic Process
  • Controller
  2 Citations (Scopus)

  5 Downloads (Pure)

• System identification and control of the broken river

  Foo, M., Ooi, S. K. & Weyer, E., Mar 2014, In: IEEE Transactions on Control Systems Technology. 22, 2, p. 618-634 17 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Rivers
  • Identification (control systems)
  • Control systems
  • Controllers
  • Water resources
  9 Citations (Scopus)

  26 Downloads (Pure)

• System identification of the Arabidopsis plant circadian system

  Foo, M., Somers, D. E. & Kim, P-J., 7 Feb 2015, In: Journal of the Korean Physical Society. 66, 4, p. 700-712 13 p.

  Research output: Contribution to journal › Article › peer-review

  • system identification
  • genes
  • proteins
  • organisms
  • rhythm
  2 Citations (Scopus)

• Uncovering the nutritional landscape of food

  Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J., 13 Mar 2015, In: PLoS ONE. 10, 3, 18 p., e0127128.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Nutrients
  • Food
  • Nutritional Requirements
  • Raw Foods
  • alpha-Linolenic Acid
  11 Citations (Scopus)

  15 Downloads (Pure)

• Waveforms of molecular oscillations reveal circadian timekeeping mechanisms

  Jo, H-H., Kim, Y. J., Kim, J. K., Foo, M., Somers, D. E. & Kim, P-J., 26 Nov 2018, In: Communications Biology. 1, 207, 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • oscillation
  • Clocks
  • Circadian Clocks
  • circadian clocks
  • Seedlings
  2 Citations (Scopus)

  13 Downloads (Pure)
• Chapter

  Control of the Broken River

  Ooi, S. K., Foo, M. & Weyer, E., Jan 2011, IFAC Proceedings Volumes (IFAC-PapersOnline). Elsevier, p. 627-632 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 18).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • control system
  • identification method
  • water saving
  • river
  • simulation
  4 Citations (Scopus)

• Modeling and control design of plant circadian system for flowering time in Arabidopsis

  Foo, M. & Kim, P. J., 9 Dec 2014, 2014 IEEE Conference on Control Applications, CCA 2014. Institute of Electrical and Electronics Engineers Inc., p. 1687-1692 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Identification (control systems)
  • Crops
  • Controllers
  • Decision support systems
  • Productivity

• Modelling of Rivers for Control Design

  Foo, M., Ooi, S. K. & Weyer, E., 1 Jun 2012, System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). Springer-Verlag London Ltd, p. 423-447 25 p. (System Identification, Environmental Modelling, and Control System Design; vol. 9780857299741).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • river
  • modeling
  • decision support system
  • river system
  • water
  7 Citations (Scopus)

• On Reproducing Existing Controllers as Model Predictive Controllers

  Foo, M. & Weyer, E., 2011, Australian Control Conference. p. 303-308 6 p. (Australian Control Conference).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

  • Model predictive control
  • Controllers
  • Reverse engineering
  7 Citations (Scopus)
• Conference proceeding

  Biomolecular implementation of nonlinear system theoretic operators

  Foo, M., Sawlekar, R., Kim, J., Bates, D. G., Stan, G. B. & Kulkarni, V., 6 Jan 2017, 2016 European Control Conference, ECC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1824-1831 8 p. (2016 European Control Conference, ECC 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  Open Access

  File

  • Chemical reactions
  • Nonlinear systems
  • Synthetic biology
  • Drug delivery
  • Catalysis
  2 Citations (Scopus)

  28 Downloads (Pure)

• Control strategies for mitigating the effect for external perturbations on gene regulatory networks

  Foo, M., Gherman, I., Denby, K. & Bates, D., 9 Jul 2017, IFAC World Congress. 1 ed. IFAC-Papers OnLine, Vol. 50. p. 12647-12652 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  Open Access

  File

  • Synthetic biology
  • Biological systems
  • Genes
  • Feedback control
  • Pathogens
  1 Citation (Scopus)

  81 Downloads (Pure)

• Nonlinearity tests of the Saint Venant equations

  Foo, M. & Weyer, E., 10 Mar 2014, Proceedings of the IEEE Conference on Decision and Control. Institute of Electrical and Electronics Engineers Inc., p. 4925-4930 6 p. (Proceedings of the IEEE Conference on Decision and Control).

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  • Water
  • Partial differential equations

• Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties

  Sawlekar, R., Foo, M. & Bates, D. G., 25 Jan 2017, Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016. Institute of Electrical and Electronics Engineers Inc., p. 548-551 4 p. (Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016).

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  Open Access

  File

  • Robustness (control systems)
  • DNA
  • Time delay
  • Uncertainty
  • Feedback
  28 Downloads (Pure)

• System identification of gene regulatory networks for perturbation mitigation via feedback control

  Foo, M., Bates, D. & Kim, J., 16 May 2017, IEEE International Conference on Networking, Sensing and Control. IEEE, p. 216-221 6 p.

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  Open Access

  File

  • Genes
  • Feedback control
  • Identification (control systems)
  • Controllers
  • Transfer functions
  2 Citations (Scopus)

  13 Downloads (Pure)

• Uncertainty modelling and stability robustness analysis of nucleic acid-based feedback control systems

  Paulino, N., Foo, M., Kim, J. & Bates, D., 17 Dec 2018, IEEE Conference on Decision and Control. IEEE, p. 1077-1082 6 p. (Proceedings of the IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control).

  Research output: Chapter in Book/Report/Conference proceeding › Conference proceeding › peer-review

  Open Access

  File

  • Nucleic acids
  • Robustness (control systems)
  • Feedback control
  • Uncertainty
  • Control systems
  1 Citation (Scopus)

  9 Downloads (Pure)