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Author

  • Mathias Foo
Article

A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

Foo, M., Gherman, I., Zhang, P., Bates, D. & Denby, K., 15 Jun 2018, In : ACS Synthetic Biology. 7, 6, p. 1553-1564 12 p., 7.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
12 Downloads (Pure)

A simplified modelling framework facilitates more complex representations of plant circadian clocks

Foo, M., Bates, D. & Akman, O., 16 Mar 2020, In : PLoS Computational Biology. 16, 3, e1007671.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)

Computationally Efficient Modelling of Stochastic Spatio-Temporal Dynamics in Biomolecular Networks

Kim, J., Foo, M. & Bates, D. G., 22 Feb 2018, In : Scientific Reports. 8, 1, 1 p., 3498.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
19 Downloads (Pure)

Design of an embedded inverse-feedforward biomolecular trackingcontroller for enzymatic reaction processes

Foo, M., Kim, J., Sawlekar, R. & Bates, D., 6 Apr 2017, In : Computers and Chemical Engineering. 99, p. 145-157 13 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
12 Downloads (Pure)

Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation

Foo, M., Kim, J. & Bates, D., 29 Mar 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 2, p. 583-595 13 p., 8254368.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
40 Downloads (Pure)

On the stability of nucleic acid feedback control systems

Paulino, N., Foo, M., Kim, J. & Bates, D. G., Sep 2020, In : Automatica. 119, p. (In-Press) 109103.

Research output: Contribution to journalArticle

PID and state feedback controllers using DNA strand displacement reactions

Paulino, N., Foo, M., Kim, J. & Bates, D., 1 Oct 2019, In : IEEE Control Systems Letters. 3, 4, p. 805-810 6 p., 8721529.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
81 Downloads (Pure)

Robustness analysis of a nucleic acid controller for a dynamic biomolecular process using the structured singular value

Paulino, N., Foo, M., Kim, J. & Bates, D., Jun 2019, In : Journal of Process Control. 78, p. 34-44 11 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
2 Downloads (Pure)

System identification and control of the broken river

Foo, M., Ooi, S. K. & Weyer, E., Mar 2014, In : IEEE Transactions on Control Systems Technology. 22, 2, p. 618-634 17 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
21 Downloads (Pure)

System identification of the Arabidopsis plant circadian system

Foo, M., Somers, D. E. & Kim, P-J., 7 Feb 2015, In : Journal of the Korean Physical Society. 66, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J., 13 Mar 2015, In : PLoS ONE. 10, 3, 18 p., e0127128.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
14 Downloads (Pure)

Waveforms of molecular oscillations reveal circadian timekeeping mechanisms

Jo, H-H., Kim, Y. J., Kim, J. K., Foo, M., Somers, D. E. & Kim, P-J., 26 Nov 2018, In : Communications Biology. 1, 207, 11 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
11 Downloads (Pure)
Chapter

Control of the Broken River

Ooi, S. K., Foo, M. & Weyer, E., Jan 2011, IFAC Proceedings Volumes (IFAC-PapersOnline). Elsevier, p. 627-632 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 18).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Modeling and control design of plant circadian system for flowering time in Arabidopsis

Foo, M. & Kim, P. J., 9 Dec 2014, 2014 IEEE Conference on Control Applications, CCA 2014. Institute of Electrical and Electronics Engineers Inc., p. 1687-1692 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modelling of Rivers for Control Design

Foo, M., Ooi, S. K. & Weyer, E., 1 Jun 2012, System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). Springer-Verlag London Ltd, p. 423-447 25 p. (System Identification, Environmental Modelling, and Control System Design; vol. 9780857299741).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

On Reproducing Existing Controllers as Model Predictive Controllers

Foo, M. & Weyer, E., 2011, Australian Control Conference. p. 303-308 6 p. (Australian Control Conference).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)
Conference proceeding

Biomolecular implementation of nonlinear system theoretic operators

Foo, M., Sawlekar, R., Kim, J., Bates, D. G., Stan, G. B. & Kulkarni, V., 6 Jan 2017, 2016 European Control Conference, ECC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1824-1831 8 p. (2016 European Control Conference, ECC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
2 Citations (Scopus)
26 Downloads (Pure)

Centralised and decentralised control of the Broken River

Foo, M., Ooi, S. K. & Weyer, E., 13 Jul 2013, European Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 2561-2566 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Control strategies for mitigating the effect for external perturbations on gene regulatory networks

Foo, M., Gherman, I., Denby, K. & Bates, D., 9 Jul 2017, IFAC World Congress. 1 ed. IFAC-Papers OnLine, Vol. 50. p. 12647-12652 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
1 Citation (Scopus)
80 Downloads (Pure)

Nonlinearity tests of the Saint Venant equations

Foo, M. & Weyer, E., 10 Mar 2014, Proceedings of the IEEE Conference on Decision and Control. Institute of Electrical and Electronics Engineers Inc., p. 4925-4930 6 p. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties

Sawlekar, R., Foo, M. & Bates, D. G., 25 Jan 2017, Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016. Institute of Electrical and Electronics Engineers Inc., p. 548-551 4 p. (Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
23 Downloads (Pure)

System identification of circadian clock in plant Arabidopsis thaliana

Foo, M., Yoo, H. Y. & Kim, P. J., 20 Oct 2013, International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., p. 241-246 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

1 Citation (Scopus)

System identification of gene regulatory networks for perturbation mitigation via feedback control

Foo, M., Bates, D. & Kim, J., 16 May 2017, IEEE International Conference on Networking, Sensing and Control. IEEE, p. 216-221 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
2 Citations (Scopus)
9 Downloads (Pure)

Uncertainty modelling and stability robustness analysis of nucleic acid-based feedback control systems

Paulino, N., Foo, M., Kim, J. & Bates, D., 17 Dec 2018, IEEE Conference on Decision and Control. IEEE, p. 1077-1082 6 p. (Proceedings of the IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)