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Author

  • Mathias Foo
Article

A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

Foo, M., Gherman, I., Zhang, P., Bates, D. & Denby, K., 15 Jun 2018, In : ACS Synthetic Biology. 7, 6, p. 1553-1564 12 p., 7.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
12 Downloads (Pure)

A simplified modelling framework facilitates more complex representations of plant circadian clocks

Foo, M., Bates, D. & Akman, O., 16 Mar 2020, In : PLoS Computational Biology. 16, 3, e1007671.

Research output: Contribution to journalArticle

Open Access
File
1 Downloads (Pure)

Computationally Efficient Modelling of Stochastic Spatio-Temporal Dynamics in Biomolecular Networks

Kim, J., Foo, M. & Bates, D. G., 22 Feb 2018, In : Scientific Reports. 8, 1, 1 p., 3498.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
19 Downloads (Pure)

Design of an embedded inverse-feedforward biomolecular trackingcontroller for enzymatic reaction processes

Foo, M., Kim, J., Sawlekar, R. & Bates, D., 6 Apr 2017, In : Computers and Chemical Engineering. 99, p. 145-157 13 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
12 Downloads (Pure)

Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry

Foo, M., Sawlekar, R. & Bates, D. G., 14 Nov 2016, In : Journal of Biological Engineering. 10, 15, 17 p., 10.

Research output: Contribution to journalArticle

Open Access
File
4 Citations (Scopus)
9 Downloads (Pure)

Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System

Foo, M., Somers, D. E. & Kim, P. J., 1 Feb 2016, In : PLoS Computational Biology. 12, 2, 21 p., e1004748.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
9 Downloads (Pure)

Nanomechanical Contribution of Collagen and von Willebrand Factor A in Marine Underwater Adhesion and Its Implication for Collagen Manipulation

Yoo, H. Y., Huang, J., Li, L., Foo, M., Zeng, H. & Hwang, D. S., 14 Mar 2016, In : Biomacromolecules. 17, 3, p. 946-953 8 p.

Research output: Contribution to journalArticle

Open Access
File
7 Citations (Scopus)
13 Downloads (Pure)

On the stability of nucleic acid feedback control systems

Paulino, N., Foo, M., Kim, J. & Bates, D. G., Sep 2020, In : Automatica. 119, p. (In-Press) 109103.

Research output: Contribution to journalArticle

Proportional-integral degradation control allows accurate tracking of biomolecular concentrations with fewer chemical reactions

Foo, M., Kim, J., Kim, J. & Bates, D. G., 23 Dec 2016, In : IEEE Life Sciences Letters. 2, 4, p. 55-58 4 p.

Research output: Contribution to journalArticle

Open Access
File
7 Downloads (Pure)

Recombinant mussel proximal thread matrix protein promotes osteoblast cell adhesion and proliferation

Yoo, H. Y., Song, Y. H., Foo, M., Seo, E., Hwang, D. S. & Seo, J. H., 16 Feb 2016, In : BMC Biotechnology. 16, 9 p., 16.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
10 Downloads (Pure)

Sugary interfaces mitigate contact damage where stiff meets soft

Yoo, H. Y., Iordachescu, M., Huang, J., Hennebert, E., Kim, S., Rho, S., Foo, M., Flammang, P., Zeng, H., Hwang, D., Waite, J. H. & Hwang, D. S., 16 Jun 2016, In : Nature Communications. 7, 8 p., 11923 .

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
18 Downloads (Pure)

System identification and control of the broken river

Foo, M., Ooi, S. K. & Weyer, E., Mar 2014, In : IEEE Transactions on Control Systems Technology. 22, 2, p. 618-634 17 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
21 Downloads (Pure)

System identification of the Arabidopsis plant circadian system

Foo, M., Somers, D. E. & Kim, P-J., 7 Feb 2015, In : Journal of the Korean Physical Society. 66, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J., 13 Mar 2015, In : PLoS ONE. 10, 3, 18 p., e0127128.

Research output: Contribution to journalArticle

Open Access
File
11 Citations (Scopus)
14 Downloads (Pure)

Waveforms of molecular oscillations reveal circadian timekeeping mechanisms

Jo, H-H., Kim, Y. J., Kim, J. K., Foo, M., Somers, D. E. & Kim, P-J., 26 Nov 2018, In : Communications Biology. 1, 207, 11 p.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
11 Downloads (Pure)
Chapter

Control of the Broken River

Ooi, S. K., Foo, M. & Weyer, E., Jan 2011, IFAC Proceedings Volumes (IFAC-PapersOnline). Elsevier, p. 627-632 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 18).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Modeling and control design of plant circadian system for flowering time in Arabidopsis

Foo, M. & Kim, P. J., 9 Dec 2014, 2014 IEEE Conference on Control Applications, CCA 2014. Institute of Electrical and Electronics Engineers Inc., p. 1687-1692 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Modelling of Rivers for Control Design

Foo, M., Ooi, S. K. & Weyer, E., 1 Jun 2012, System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). Springer-Verlag London Ltd, p. 423-447 25 p. (System Identification, Environmental Modelling, and Control System Design; vol. 9780857299741).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

On Reproducing Existing Controllers as Model Predictive Controllers

Foo, M. & Weyer, E., 2011, Australian Control Conference. p. 303-308 6 p. (Australian Control Conference).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)
Conference proceeding

Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions

Foo, M., Sawlekar, R., Kulkarni, V. & Bates, D., 16 Aug 2016, IEEE International Conference of Engineering in Medicine and Biology Society. IEEE, p. 1455-1458 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
8 Downloads (Pure)

Biomolecular implementation of nonlinear system theoretic operators

Foo, M., Sawlekar, R., Kim, J., Bates, D. G., Stan, G. B. & Kulkarni, V., 6 Jan 2017, 2016 European Control Conference, ECC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1824-1831 8 p. (2016 European Control Conference, ECC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
2 Citations (Scopus)
26 Downloads (Pure)

Centralised and decentralised control of the Broken River

Foo, M., Ooi, S. K. & Weyer, E., 13 Jul 2013, European Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 2561-2566 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Control strategies for mitigating the effect for external perturbations on gene regulatory networks

Foo, M., Gherman, I., Denby, K. & Bates, D., 9 Jul 2017, IFAC World Congress. 1 ed. IFAC-Papers OnLine, Vol. 50. p. 12647-12652 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
1 Citation (Scopus)
80 Downloads (Pure)

Nonlinearity tests of the Saint Venant equations

Foo, M. & Weyer, E., 10 Mar 2014, Proceedings of the IEEE Conference on Decision and Control. Institute of Electrical and Electronics Engineers Inc., p. 4925-4930 6 p. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties

Sawlekar, R., Foo, M. & Bates, D. G., 25 Jan 2017, Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016. Institute of Electrical and Electronics Engineers Inc., p. 548-551 4 p. (Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
23 Downloads (Pure)

System identification of circadian clock in plant Arabidopsis thaliana

Foo, M., Yoo, H. Y. & Kim, P. J., 20 Oct 2013, International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., p. 241-246 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

1 Citation (Scopus)

System identification of gene regulatory networks for perturbation mitigation via feedback control

Foo, M., Bates, D. & Kim, J., 16 May 2017, IEEE International Conference on Networking, Sensing and Control. IEEE, p. 216-221 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
2 Citations (Scopus)
9 Downloads (Pure)

Uncertainty modelling and stability robustness analysis of nucleic acid-based feedback control systems

Paulino, N., Foo, M., Kim, J. & Bates, D., 17 Dec 2018, IEEE Conference on Decision and Control. IEEE, p. 1077-1082 6 p. (Proceedings of the IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
1 Citation (Scopus)
7 Downloads (Pure)