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Research Output 2004 2019

  • 118 Citations
  • 7 h-Index
  • 18 Article
  • 12 Conference proceeding
  • 6 Chapter
  • 1 Other
2019
1 Citation (Scopus)
34 Downloads (Pure)

Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation

Foo, M., Kim, J. & Bates, D., 29 Mar 2019, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16, 2, p. 583-595 13 p., 8254368.

Research output: Contribution to journalArticle

Open Access
File
Gene Regulatory Networks
Gene Regulatory Network
S-system
Genes
Perturbation
1 Citation (Scopus)
59 Downloads (Pure)

PID and state feedback controllers using DNA strand displacement reactions

Paulino, N., Foo, M., Kim, J. & Bates, D., 1 Oct 2019, In : IEEE Control Systems Letters. 3, 4, p. 805-810 6 p., 8721529.

Research output: Contribution to journalArticle

Open Access
File
State feedback
State Feedback
DNA
Nucleic acids
Controller
1 Citation (Scopus)

Robustness analysis of a nucleic acid controller for a dynamic biomolecular process using the structured singular value

Paulino, N., Foo, M., Kim, J. & Bates, D., Jun 2019, In : Journal of Process Control. 78, p. 34-44 11 p.

Research output: Contribution to journalArticle

Structured Singular Value
Robustness Analysis
Nucleic acids
Dynamic Process
Robustness (control systems)
2018
2 Citations (Scopus)
8 Downloads (Pure)

A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

Foo, M., Gherman, I., Zhang, P., Bates, D. & Denby, K., 15 Jun 2018, In : ACS Synthetic Biology. 7, 6, p. 1553-1564 12 p., 7.

Research output: Contribution to journalArticle

Open Access
File
Pathogens
Feedback control
Controllers
Synthetic Biology
Arabidopsis
1 Citation (Scopus)
18 Downloads (Pure)

Computationally Efficient Modelling of Stochastic Spatio-Temporal Dynamics in Biomolecular Networks

Kim, J., Foo, M. & Bates, D. G., 22 Feb 2018, In : Scientific Reports. 8, 1, 1 p., 3498.

Research output: Contribution to journalArticle

Open Access
File
Molecules
Molecular interactions
Computational efficiency
Trajectories
Kinetics
1 Citation (Scopus)
3 Downloads (Pure)

Uncertainty modelling and stability robustness analysis of nucleic acid-based feedback control systems

Paulino, N., Foo, M., Kim, J. & Bates, D., 17 Dec 2018, IEEE Conference on Decision and Control. IEEE, p. 1077-1082 6 p. (Proceedings of the IEEE Conference on Decision & Control / IEEE Control Systems Society. IEEE Conference on Decision & Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Nucleic acids
Robustness (control systems)
Feedback control
Control systems
Networks (circuits)
1 Citation (Scopus)
9 Downloads (Pure)

Waveforms of molecular oscillations reveal circadian timekeeping mechanisms

Jo, H-H., Kim, Y. J., Kim, J. K., Foo, M., Somers, D. E. & Kim, P-J., 26 Nov 2018, In : Communications Biology. 1, 207, 11 p.

Research output: Contribution to journalArticle

Open Access
File
Circadian Clocks
Proteins
Biochemical Phenomena
Biological Clocks
Seedlings
2017
2 Citations (Scopus)
22 Downloads (Pure)

Biomolecular implementation of nonlinear system theoretic operators

Foo, M., Sawlekar, R., Kim, J., Bates, D. G., Stan, G. B. & Kulkarni, V., 6 Jan 2017, 2016 European Control Conference, ECC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1824-1831 8 p. (2016 European Control Conference, ECC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Nonlinear systems
Chemical reactions
Rational functions
Drug delivery
Catalysis
1 Citation (Scopus)
62 Downloads (Pure)

Control strategies for mitigating the effect for external perturbations on gene regulatory networks

Foo, M., Gherman, I., Denby, K. & Bates, D., 9 Jul 2017, IFAC World Congress. 1 ed. IFAC-Papers OnLine, Vol. 50. p. 12647-12652 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Biological systems
Feedback control
Genes
Pathogens
Control theory
4 Citations (Scopus)
11 Downloads (Pure)

Design of an embedded inverse-feedforward biomolecular trackingcontroller for enzymatic reaction processes

Foo, M., Kim, J., Sawlekar, R. & Bates, D., 6 Apr 2017, In : Computers and Chemical Engineering. 99, p. 145-157 13 p.

Research output: Contribution to journalArticle

Open Access
File
Controllers
Chemical reactions
Circuit theory
Feedback
Chemical engineering
20 Downloads (Pure)

Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties

Sawlekar, R., Foo, M. & Bates, D. G., 25 Jan 2017, Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016. Institute of Electrical and Electronics Engineers Inc., p. 548-551 4 p. (Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Robustness (control systems)
Time delay
DNA
Feedback
Controllers
2 Citations (Scopus)
7 Downloads (Pure)

System identification of gene regulatory networks for perturbation mitigation via feedback control

Foo, M., Bates, D. & Kim, J., 16 May 2017, IEEE International Conference on Networking, Sensing and Control. IEEE, p. 216-221 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Feedback control
Identification (control systems)
Genes
Controllers
Transfer functions
2016
6 Downloads (Pure)

Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions

Foo, M., Sawlekar, R., Kulkarni, V. & Bates, D., 16 Aug 2016, IEEE International Conference of Engineering in Medicine and Biology Society. IEEE, p. 1455-1458 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Open Access
File
Feedback control
DNA
Control systems
Controllers
Chemical reactions
4 Citations (Scopus)
9 Downloads (Pure)

Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry

Foo, M., Sawlekar, R. & Bates, D. G., 14 Nov 2016, In : Journal of Biological Engineering. 10, 15, 17 p., 10.

Research output: Contribution to journalArticle

Open Access
File
Synthetic Biology
Chemical reactions
DNA
Cell signaling
Nonlinear feedback
9 Citations (Scopus)
9 Downloads (Pure)

Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System

Foo, M., Somers, D. E. & Kim, P. J., 1 Feb 2016, In : PLoS Computational Biology. 12, 2, 21 p., e1004748.

Research output: Contribution to journalArticle

Open Access
File
Arabidopsis
circadian rhythm
Clocks
Circadian Clocks
kernel
6 Citations (Scopus)
7 Downloads (Pure)

Nanomechanical Contribution of Collagen and von Willebrand Factor A in Marine Underwater Adhesion and Its Implication for Collagen Manipulation

Yoo, H. Y., Huang, J., Li, L., Foo, M., Zeng, H. & Hwang, D. S., 14 Mar 2016, In : Biomacromolecules. 17, 3, p. 946-953 8 p.

Research output: Contribution to journalArticle

Open Access
File
von Willebrand Factor
Collagen
Adhesion
Bearings (structural)
Proteins
6 Downloads (Pure)

Proportional-integral degradation control allows accurate tracking of biomolecular concentrations with fewer chemical reactions

Foo, M., Kim, J., Kim, J. & Bates, D. G., 23 Dec 2016, In : IEEE Life Sciences Letters. 2, 4, p. 55-58 4 p.

Research output: Contribution to journalArticle

Open Access
File
Terminology
Chemical reactions
Degradation
Networks (circuits)
Tuning
6 Citations (Scopus)
10 Downloads (Pure)

Recombinant mussel proximal thread matrix protein promotes osteoblast cell adhesion and proliferation

Yoo, H. Y., Song, Y. H., Foo, M., Seo, E., Hwang, D. S. & Seo, J. H., 16 Feb 2016, In : BMC Biotechnology. 16, 9 p., 16.

Research output: Contribution to journalArticle

Open Access
File
Bivalvia
Osteoblasts
Cell Adhesion
Collagen
Cell Proliferation
13 Citations (Scopus)
13 Downloads (Pure)

Sugary interfaces mitigate contact damage where stiff meets soft

Yoo, H. Y., Iordachescu, M., Huang, J., Hennebert, E., Kim, S., Rho, S., Foo, M., Flammang, P., Zeng, H., Hwang, D., Waite, J. H. & Hwang, D. S., 16 Jun 2016, In : Nature Communications. 7, 8 p., 11923 .

Research output: Contribution to journalArticle

Open Access
File
dopa
Dihydroxyphenylalanine
Licensure
Bionics
Bearings (structural)
2015
2 Citations (Scopus)

System identification of the Arabidopsis plant circadian system

Foo, M., Somers, D. E. & Kim, P-J., 7 Feb 2015, In : Journal of the Korean Physical Society. 66, 4, p. 700-712 13 p.

Research output: Contribution to journalArticle

system identification
genes
proteins
organisms
rhythm
8 Citations (Scopus)
14 Downloads (Pure)

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J., 13 Mar 2015, In : PLoS ONE. 10, 3, 18 p., e0127128.

Research output: Contribution to journalArticle

Open Access
File
Nutrients
Food
nutrients
nutrient balance
nutrient requirements
2014

Modeling and control design of plant circadian system for flowering time in Arabidopsis

Foo, M. & Kim, P. J., 9 Dec 2014, 2014 IEEE Conference on Control Applications, CCA 2014. Institute of Electrical and Electronics Engineers Inc., p. 1687-1692 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Identification (control systems)
Bearings (structural)
Controllers
Decision support systems
Crops

Nonlinearity tests of the Saint Venant equations

Foo, M. & Weyer, E., 10 Mar 2014, Proceedings of the IEEE Conference on Decision and Control. Institute of Electrical and Electronics Engineers Inc., p. 4925-4930 6 p. (Proceedings of the IEEE Conference on Decision and Control).

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

nonlinearity
one dimensional flow
water
pulse detonation engines
partial differential equations
7 Citations (Scopus)
10 Downloads (Pure)

System identification and control of the broken river

Foo, M., Ooi, S. K. & Weyer, E., Mar 2014, In : IEEE Transactions on Control Systems Technology. 22, 2, p. 618-634 17 p.

Research output: Contribution to journalArticle

Open Access
File
Identification (control systems)
Rivers
Control systems
Controllers
Decentralized control
2013

Centralised and decentralised control of the Broken River

Foo, M., Ooi, S. K. & Weyer, E., 13 Jul 2013, European Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 2561-2566 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Decentralized control
Rivers
Controllers
Model predictive control
Water resources
1 Citation (Scopus)

System identification of circadian clock in plant Arabidopsis thaliana

Foo, M., Yoo, H. Y. & Kim, P. J., 20 Oct 2013, International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., p. 241-246 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Clocks
Identification (control systems)
Mathematical models
Ordinary differential equations
Physics
2012
6 Citations (Scopus)

Modelling of Rivers for Control Design

Foo, M., Ooi, S. K. & Weyer, E., 1 Jun 2012, System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). Springer-Verlag London Ltd, p. 423-447 25 p. (System Identification, Environmental Modelling, and Control System Design; vol. 9780857299741).

Research output: Chapter in Book/Report/Conference proceedingChapter

Rivers
Water
Decision support systems
Agriculture
Farms
2011
4 Citations (Scopus)

Control of the Broken River

Ooi, S. K., Foo, M. & Weyer, E., Jan 2011, IFAC Proceedings Volumes (IFAC-PapersOnline). Elsevier, p. 627-632 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 18).

Research output: Chapter in Book/Report/Conference proceedingChapter

Rivers
Control systems
Controllers
Frequency response
Identification (control systems)
7 Citations (Scopus)

On Reproducing Existing Controllers as Model Predictive Controllers

Foo, M. & Weyer, E., 2011, Australian Control Conference. p. 303-308 6 p. (Australian Control Conference).

Research output: Chapter in Book/Report/Conference proceedingChapter

Model predictive control
Controllers
Reverse engineering
2010
7 Citations (Scopus)

Modelling of River for Control Design

Foo, M., Ooi, S. K. & Weyer, E., 28 Oct 2010, Proceedings of the IEEE International Conference on Control Applications. IEEE, p. 1862-1867 6 p. (Proceedings of the IEEE International Conference on Control Applications).

Research output: Chapter in Book/Report/Conference proceedingChapter

Rivers
Time delay
Water
Decision support systems
Farms
10 Citations (Scopus)

Segmentation of a river using the Saint Venant equations

Foo, M., Weyer, E. & Bedjaoui, N., 2010, Proceedings of the IEEE International Conference on Control Applications. p. 848-853 6 p. (Proceedings of the IEEE International Conference on Control Applications).

Research output: Chapter in Book/Report/Conference proceedingChapter

segmentation
river
simulation
geometry
river system
2007
1 Citation (Scopus)

Modelling of Direction-dependent Systems using Bilinear Models

Yap, T. T. V., Tan, A. H. & Foo, M. F. L., 2007, p. 1-6. 7 p.

Research output: Contribution to conferenceOther

1 Citation (Scopus)

Pseudorandom maximum length signal design with bias compensation least squares estimation for system identification

Foo, M. F. L., Tan, A. H. & Basu, K. P., 25 Jun 2007, IMTC 2007. IEEE Instrumentation and Measurement Technology Conference Proceedings, 2007. New York: IEEE, p. 417-422 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Identification (control systems)
Compensation and Redress
2006

Maximum Length Ternary Signal Design Based on Nyquist Point Mapping

Foo, M. F. L., Tan, A. H. & Basu, K. P., 2006, In : IFAC papers online. 39, 1, p. 1127-1132 6 p.

Research output: Contribution to journalArticle

Identification (control systems)
8 Citations (Scopus)

Ternary pseudorandom signal design for uniform excitation and reduced effect of nonlinear distortion

Tan, A. H. & Foo, M. F. L., 2006, In : Electronics Letters. 42, 12, p. 676-677 2 p.

Research output: Contribution to journalArticle

2004

Comparison of bilinear systems with direction-dependent systems

Yap, T., Tan, A. H. & Foo, M., 6 Sep 2004, UKACC.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Nonlinear distortion
1 Citation (Scopus)

Optimisation of a static nonlinear compensator for bilinear systems

Foo, M. F. L., Tan, A. H. & Yap, T. T. V., 8 Nov 2004, Proceedings of the 21st IEEE Instrumentation and Measurement Technology Conference. IEEE, p. 2187-2192 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference proceeding

Nonlinear distortion
Tuning