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Mathias Foo

Dr

  • 65 Citations
  • 5 h-Index
20042018
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Research Output 2004 2018

  • 65 Citations
  • 5 h-Index
  • 15 Article
  • 7 Chapter
  • 6 Conference proceeding
  • 1 Other
2018

A Framework for Engineering Stress Resilient Plants Using Genetic Feedback Control and Regulatory Network Rewiring

Foo, M., Gherman, I., Zhang, P., Bates, D. & Denby, K. 15 Jun 2018 In : ACS Synthetic Biology. 7, 6, p. 1553-1564 12 p., 7

Research output: Research - peer-reviewArticle

Pathogens
Feedback control
Controllers
Genes
Feedback

Computationally Efficient Modelling of Stochastic Spatio-Temporal Dynamics in Biomolecular Networks

Kim, J., Foo, M. & Bates, D. G. 22 Feb 2018 In : Scientific Reports. 8, 1, 1 p., 3498

Research output: Research - peer-reviewArticle

Open Access
File
Molecules
Molecular interactions
Computational efficiency
Trajectories
Kinetics

Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation

Foo, M., Kim, J. & Bates, D. 11 Jan 2018 In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. (in Press), 99, p. (in press) 14 p.

Research output: Research - peer-reviewArticle

Open Access
File
Gene Regulatory Networks
Gene Regulatory Network
S-system
Genes
Perturbation
2017

Biomolecular implementation of nonlinear system theoretic operators

Foo, M., Sawlekar, R., Kim, J., Bates, D. G., Stan, G. B. & Kulkarni, V. 6 Jan 2017 2016 European Control Conference, ECC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1824-1831 8 p. (2016 European Control Conference, ECC 2016)

Research output: Research - peer-reviewChapter

Open Access
File
Nonlinear systems
Chemical reactions
Rational functions
Drug delivery
Catalysis
1 Citations

Design of an embedded inverse-feedforward biomolecular trackingcontroller for enzymatic reaction processes

Foo, M., Kim, J., Sawlekar, R. & Bates, D. 6 Apr 2017 In : Computers and Chemical Engineering. 99, p. 145-157 13 p.

Research output: Research - peer-reviewArticle

Open Access
File
Controllers
Chemical reactions
Circuit theory
Feedback
Chemical engineering

Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties

Sawlekar, R., Foo, M. & Bates, D. G. 25 Jan 2017 Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016. Institute of Electrical and Electronics Engineers Inc., p. 548-551 4 p. (Proceedings - 2016 IEEE Biomedical Circuits and Systems Conference, BioCAS 2016)

Research output: Research - peer-reviewConference proceeding

Open Access
File
Time delay
Feedback
Controllers
Networks (circuits)
Feedback control
2016
1 Citations

Exploiting the dynamic properties of covalent modification cycle for the design of synthetic analog biomolecular circuitry

Foo, M., Sawlekar, R. & Bates, D. G. 14 Nov 2016 In : Journal of Biological Engineering. 10, 15, 17 p., 10

Research output: Research - peer-reviewArticle

Open Access
File
Chemical reactions
Cell signaling
Nonlinear feedback
Networks (circuits)
Mathematical operators
4 Citations

Kernel Architecture of the Genetic Circuitry of the Arabidopsis Circadian System

Foo, M., Somers, D. E. & Kim, P. J. 1 Feb 2016 In : PLoS computational biology. 12, 2, 21 p., e1004748

Research output: Research - peer-reviewArticle

Open Access
File
Arabidopsis
circadian rhythm
Clocks
Circadian Clocks
kernel
2 Citations

Nanomechanical Contribution of Collagen and von Willebrand Factor A in Marine Underwater Adhesion and Its Implication for Collagen Manipulation

Yoo, H. Y., Huang, J., Li, L., Foo, M., Zeng, H. & Hwang, D. S. 14 Mar 2016 In : Biomacromolecules. 17, 3, p. 946-953 8 p.

Research output: Research - peer-reviewArticle

von Willebrand Factor
Collagen
Adhesion
Bearings (structural)
Proteins

Proportional-integral degradation control allows accurate tracking of biomolecular concentrations with fewer chemical reactions

Foo, M., Kim, J., Kim, J. & Bates, D. G. 23 Dec 2016 In : IEEE Life Sciences Letters. 2, 4, p. 55-58 4 p.

Research output: Research - peer-reviewArticle

Open Access
File
Chemical reactions
Networks (circuits)
Terminology
Feedback
Controllers
1 Citations

Recombinant mussel proximal thread matrix protein promotes osteoblast cell adhesion and proliferation

Yoo, H. Y., Song, Y. H., Foo, M., Seo, E., Hwang, D. S. & Seo, J. H. 16 Feb 2016 In : BMC Biotechnology. 16, 9 p., 16

Research output: Research - peer-reviewArticle

Open Access
File
Bivalvia
Osteoblasts
Cell Adhesion
Collagen
Weight-Bearing
4 Citations

Sugary interfaces mitigate contact damage where stiff meets soft

Yoo, H. Y., Iordachescu, M., Huang, J., Hennebert, E., Kim, S., Rho, S., Foo, M., Flammang, P., Zeng, H., Hwang, D., Waite, J. H. & Hwang, D. S. 16 Jun 2016 In : Nature Communications. 7, 8 p., 11923

Research output: Research - peer-reviewArticle

Open Access
File
dopa
Dihydroxyphenylalanine
Licensure
Bionics
Bearings (structural)
2015
2 Citations

System identification of the Arabidopsis plant circadian system

Foo, M., Somers, D. E. & Kim, P-J. 7 Feb 2015 In : Journal of the Korean Physical Society. 66, 4, p. 700-712 13 p.

Research output: Research - peer-reviewArticle

system identification
genes
proteins
organisms
rhythm
3 Citations

Uncovering the nutritional landscape of food

Kim, S., Sung, J., Foo, M., Jin, Y. S. & Kim, P. J. 13 Mar 2015 In : PLoS ONE. 10, 3, 18 p., e0127128

Research output: Research - peer-reviewArticle

Open Access
File
Food
nutrients
nutrient balance
nutrient requirements
Nutrition
2014

Modeling and control design of plant circadian system for flowering time in Arabidopsis

Foo, M. & Kim, P. J. 9 Dec 2014 2014 IEEE Conference on Control Applications, CCA 2014. Institute of Electrical and Electronics Engineers Inc., p. 1687-1692 6 p.

Research output: Research - peer-reviewChapter

Identification (control systems)
Bearings (structural)
Controllers
Decision support systems
Crops

Nonlinearity tests of the Saint Venant equations

Foo, M. & Weyer, E. 10 Mar 2014 Proceedings of the IEEE Conference on Decision and Control. Institute of Electrical and Electronics Engineers Inc., p. 4925-4930 6 p. (Proceedings of the IEEE Conference on Decision and Control)

Research output: Research - peer-reviewConference proceeding

nonlinearity
one dimensional flow
water
pulse detonation engines
partial differential equations
5 Citations

System identification and control of the broken river

Foo, M., Ooi, S. K. & Weyer, E. Mar 2014 In : IEEE Transactions on Control Systems Technology. 22, 2, p. 618-634 17 p.

Research output: Research - peer-reviewArticle

Identification (control systems)
Control systems
Controllers
Decentralized control
Water resources
2013

Centralised and decentralised control of the Broken River

Foo, M., Ooi, S. K. & Weyer, E. 13 Jul 2013 European Control Conference. Institute of Electrical and Electronics Engineers Inc., p. 2561-2566 6 p.

Research output: Research - peer-reviewConference proceeding

Decentralized control
Controllers
Water resources
Time delay
Water
1 Citations

System identification of circadian clock in plant Arabidopsis thaliana

Foo, M., Yoo, H. Y. & Kim, P. J. 20 Oct 2013 International Conference on Control, Automation and Systems. Institute of Electrical and Electronics Engineers Inc., p. 241-246 6 p.

Research output: Research - peer-reviewConference proceeding

Clocks
Identification (control systems)
Mathematical models
Ordinary differential equations
Physics
2012
5 Citations

Modelling of Rivers for Control Design

Foo, M., Ooi, S. K. & Weyer, E. 1 Jun 2012 System Identification, Environmental Modelling, and Control System Design. Wang, L. & Garnier, H. (eds.). Springer-Verlag London Ltd, p. 423-447 25 p. (System Identification, Environmental Modelling, and Control System Design; vol. 9780857299741)

Research output: Research - peer-reviewChapter

Water
Decision support systems
Farms
Partial differential equations
Lakes
2011
4 Citations

Control of the Broken River

Ooi, S. K., Foo, M. & Weyer, E. Jan 2011 IFAC Proceedings Volumes (IFAC-PapersOnline). Elsevier, p. 627-632 6 p. (IFAC Proceedings Volumes (IFAC-PapersOnline); vol. 18)

Research output: Research - peer-reviewChapter

Control systems
Controllers
Frequency response
Identification (control systems)
Systems analysis
5 Citations

On Reproducing Existing Controllers as Model Predictive Controllers

Foo, M. & Weyer, E. 2011 Australian Control Conference. p. 303-308 6 p. (Australian Control Conference)

Research output: Research - peer-reviewChapter

Controllers
Reverse engineering
Engineers
2010
7 Citations

Modelling of River for Control Design

Foo, M., Ooi, S. K. & Weyer, E. 28 Oct 2010 Proceedings of the IEEE International Conference on Control Applications. IEEE, p. 1862-1867 6 p. (Proceedings of the IEEE International Conference on Control Applications)

Research output: Research - peer-reviewChapter

Time delay
Water
Decision support systems
Farms
Partial differential equations
10 Citations

Segmentation of a river using the Saint Venant equations

Foo, M., Weyer, E. & Bedjaoui, N. 2010 Proceedings of the IEEE International Conference on Control Applications. p. 848-853 6 p. (Proceedings of the IEEE International Conference on Control Applications)

Research output: Research - peer-reviewChapter

segmentation
simulation
geometry
river system
friction
2007
1 Citations

Modelling of Direction-dependent Systems using Bilinear Models

Yap, T. T. V., Tan, A. H. & Foo, M. F. L. 2007 p. 1-6 7 p.

Research output: Research - peer-reviewOther

1 Citations

Pseudorandom maximum length signal design with bias compensation least squares estimation for system identification

Foo, M. F. L., Tan, . A. H. & Basu, K. P. 25 Jun 2007 IMTC 2007. IEEE Instrumentation and Measurement Technology Conference Proceedings, 2007. New York: IEEE, p. 417-422 6 p.

Research output: Research - peer-reviewConference proceeding

Identification (control systems)
2006

Maximum Length Ternary Signal Design Based on Nyquist Point Mapping

Foo, M. F. L., Tan, A. H. & Basu, K. P. 2006 In : IFAC papers online. 39, 1, p. 1127-1132 6 p.

Research output: Research - peer-reviewArticle

Identification (control systems)
7 Citations

Ternary pseudorandom signal design for uniform excitation and reduced effect of nonlinear distortion

Tan, A. H. & Foo, M. F. L. 2006 In : Electronics Letters. 42, 12, p. 676-677 2 p.

Research output: Research - peer-reviewArticle

2004
1 Citations

Optimisation of a static nonlinear compensator for bilinear systems

Foo, M. F. L., Tan, A. H. & Yap, T. T. V. 8 Nov 2004 Proceedings of the 21st IEEE Instrumentation and Measurement Technology Conference. IEEE, p. 2187-2192 6 p.

Research output: Research - peer-reviewConference proceeding

Nonlinear distortion